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APPROX
2006
Springer
109views Algorithms» more  APPROX 2006»
15 years 9 months ago
Dobrushin Conditions and Systematic Scan
We consider Glauber dynamics on finite spin systems. The mixing time of Glauber dynamics can be bounded in terms of the influences of sites on each other. We consider three parame...
Martin E. Dyer, Leslie Ann Goldberg, Mark Jerrum
BMCBI
2010
152views more  BMCBI 2010»
15 years 6 months ago
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
Background: Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are us...
Yong Li, Lili Liu, Xi Bai, Hua Cai, Wei Ji, Dianji...
BMCBI
2010
132views more  BMCBI 2010»
15 years 6 months ago
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Background: In microarray gene expression profiling experiments, differentially expressed genes (DEGs) are detected from among tens of thousands of genes on an array using statist...
Wayne Wenzhong Xu, Clay J. Carter
142
Voted
BMCBI
2006
158views more  BMCBI 2006»
15 years 6 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
MOR
2008
169views more  MOR 2008»
15 years 6 months ago
The Flow Set with Partial Order
The flow set with partial order is a mixed-integer set described by a budget on total flow and a partial order on the arcs that may carry positive flow. This set is a common substr...
Alper Atamtürk, Muhong Zhang