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ICMLA
2008
15 years 5 months ago
Ensemble Machine Methods for DNA Binding
We introduce three ensemble machine learning methods for analysis of biological DNA binding by transcription factors (TFs). The goal is to identify both TF target genes and their ...
Yue Fan, Mark A. Kon, Charles DeLisi
CONSTRAINTS
2008
182views more  CONSTRAINTS 2008»
15 years 4 months ago
Constraint Programming in Structural Bioinformatics
Bioinformatics aims at applying computer science methods to the wealth of data collected in a variety of experiments in life sciences (e.g. cell and molecular biology, biochemistry...
Pedro Barahona, Ludwig Krippahl
IDA
2006
Springer
15 years 4 months ago
Structural hidden Markov models: An application to handwritten numeral recognition
We introduce in this paper a generalization of the widely used hidden Markov models (HMM's), which we name "structural hidden Markov models" (SHMM). Our approach is ...
Djamel Bouchaffra, Jun Tan
JMLR
2008
148views more  JMLR 2008»
15 years 4 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
IDA
2007
Springer
15 years 4 months ago
Inference of node replacement graph grammars
Graph grammars combine the relational aspect of graphs with the iterative and recursive aspects of string grammars, and thus represent an important next step in our ability to dis...
Jacek P. Kukluk, Lawrence B. Holder, Diane J. Cook