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NAR
2008
119views more  NAR 2008»
13 years 7 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
JBCB
2010
138views more  JBCB 2010»
13 years 2 months ago
Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
Artem Sokolov, Asa Ben-Hur
CANDC
2006
ACM
13 years 7 months ago
Domain boundary prediction based on profile domain linker propensity index
Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multidomain proteins but also for the exper...
Qiwen Dong, Xiaolong Wang, Lei Lin, Zhiming Xu
JMLR
2008
110views more  JMLR 2008»
13 years 7 months ago
Cross-Validation Optimization for Large Scale Structured Classification Kernel Methods
We propose a highly efficient framework for penalized likelihood kernel methods applied to multiclass models with a large, structured set of classes. As opposed to many previous a...
Matthias W. Seeger
ICIAP
2009
ACM
13 years 5 months ago
Tree Covering within a Graph Kernel Framework for Shape Classification
Abstract. Shape classification using graphs and skeletons usually involves edition processes in order to reduce the influence of structural noise. However, edition distances can no...
François-Xavier Dupé, Luc Brun