262 search results - page 4 / 53 » Structural alignment based kernels for protein structure cla... |
CIBB
2008
13 years 9 months ago
2008
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
NAR
2007
13 years 7 months ago
2007
TOPOFIT-DB (T-DB) is a public web-based database of protein structural alignments based on the TOPOFIT method, providing a comprehensive resource for comparative analysis of prote...
BIBE
2007
IEEE
13 years 8 months ago
2007
IEEE
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
BIOINFORMATICS
2005
13 years 7 months ago
2005
A key issue in supervised protein classification is the representation of input sequences of amino acids. Recent work using string kernels for protein data has achieved state-of-t...
ICML
2005
IEEE
14 years 8 months ago
2005
IEEE
We present new, general-purpose kernels for protein structure analysis, and describe how to apply them to structural motif discovery and function classification. Experiments show ...