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» Structure Matching for Enhancing UDDI Queries Results
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BMCBI
2004
208views more  BMCBI 2004»
13 years 7 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
CIKM
2007
Springer
14 years 1 months ago
Nugget discovery in visual exploration environments by query consolidation
Queries issued by casual users or specialists exploring a data set often point us to important subsets of the data, be it clusters, outliers or other features of particular import...
Di Yang, Elke A. Rundensteiner, Matthew O. Ward
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
14 years 25 days ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
BMCBI
2006
195views more  BMCBI 2006»
13 years 7 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
SIGMOD
2007
ACM
111views Database» more  SIGMOD 2007»
14 years 7 months ago
Query relaxation using malleable schemas
In contrast to classical databases and IR systems, real-world information systems have to deal increasingly with very vague and diverse structures for information management and s...
Xuan Zhou, Julien Gaugaz, Wolf-Tilo Balke, Wolfgan...