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KBS
2002
69views more  KBS 2002»
13 years 10 months ago
A knowledge-based approach for business process reengineering, SHAMASH
In this paper we present an overview of SHAMASH, a process modelling tool for business process reengineering. The main features that differentiate it from most current related too...
Ricardo Aler, Daniel Borrajo, David Camacho, Almud...
BMCBI
2010
109views more  BMCBI 2010»
13 years 11 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
BMCBI
2008
103views more  BMCBI 2008»
13 years 11 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
ISMB
1996
14 years 8 days ago
A Knowledge-Based Method for Protein Structure Refinement and Prediction
The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
Shankar Subramaniam, David K. Tcheng, James M. Fen...
BMCBI
2005
159views more  BMCBI 2005»
13 years 11 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...