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BMCBI
2010
129views more  BMCBI 2010»
13 years 7 months ago
Automatic prediction of catalytic residues by modeling residue structural neighborhood
Background: Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classific...
Elisa Cilia, Andrea Passerini
BMCBI
2010
227views more  BMCBI 2010»
13 years 7 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
CIKM
2011
Springer
12 years 7 months ago
Keyword search over RDF graphs
Large knowledge bases consisting of entities and relationships between them have become vital sources of information for many applications. Most of these knowledge bases adopt the...
Shady Elbassuoni, Roi Blanco
BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
TASLP
2011
13 years 2 months ago
A Generative Student Model for Scoring Word Reading Skills
—This paper presents a novel student model intended to automate word-list-based reading assessments in a classroom setting, specifically for a student population that includes b...
Joseph Tepperman, Sungbok Lee, Shrikanth Narayanan...