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BMCBI
2006
133views more  BMCBI 2006»
13 years 10 months ago
An integrated approach to the prediction of domain-domain interactions
Background: The development of high-throughput technologies has produced several large scale protein interaction data sets for multiple species, and significant efforts have been ...
Hyunju Lee, Minghua Deng, Fengzhu Sun, Ting Chen
BMCBI
2006
129views more  BMCBI 2006»
13 years 10 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
IJSWIS
2007
138views more  IJSWIS 2007»
13 years 10 months ago
Using a Natural Language Understanding System to Generate Semantic Web Content
We describe our research on automatically generating rich semantic annotations of text and making it available on the Semantic Web. In particular, we discuss the challenges involv...
Akshay Java, Sergei Nirenburg, Marjorie McShane, T...
BMCBI
2005
292views more  BMCBI 2005»
13 years 10 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
JBI
2007
120views Bioinformatics» more  JBI 2007»
13 years 10 months ago
Measures of semantic similarity and relatedness in the biomedical domain
Measures of semantic similarity between concepts are widely used in Natural Language Processing. In this article, we show how six existing domain-independent measures can be adapt...
Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Pa...