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» Structured Output Learning with High Order Loss Functions
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PCI
2005
Springer
14 years 2 months ago
Protein Classification with Multiple Algorithms
Nowadays, the number of protein sequences being stored in central protein databases from labs all over the world is constantly increasing. From these proteins only a fraction has b...
Sotiris Diplaris, Grigorios Tsoumakas, Pericles A....
BMCBI
2010
129views more  BMCBI 2010»
13 years 8 months ago
The LabelHash Algorithm for Substructure Matching
Background: There is an increasing number of proteins with known structure but unknown function. Determining their function would have a significant impact on understanding diseas...
Mark Moll, Drew H. Bryant, Lydia E. Kavraki
STOC
2012
ACM
209views Algorithms» more  STOC 2012»
11 years 11 months ago
Nearly optimal solutions for the chow parameters problem and low-weight approximation of halfspaces
The Chow parameters of a Boolean function f : {−1, 1}n → {−1, 1} are its n + 1 degree-0 and degree-1 Fourier coefficients. It has been known since 1961 [Cho61, Tan61] that ...
Anindya De, Ilias Diakonikolas, Vitaly Feldman, Ro...
BMCBI
2006
100views more  BMCBI 2006»
13 years 8 months ago
STAR: predicting recombination sites from amino acid sequence
Background: Designing novel proteins with site-directed recombination has enormous prospects. By locating effective recombination sites for swapping sequence parts, the probabilit...
Denis C. Bauer, Mikael Bodén, Ricarda Thier...
MSWIM
2009
ACM
14 years 3 months ago
Design and evaluation of host identity protocol (HIP) simulation framework for INET/OMNeT++
Host Identity Protocol (HIP) decouples IP addresses from higher layer Internet applications by proposing a new, cryptographic namespace for host identities. HIP has great potentia...
László Bokor, Szabolcs Novácz...