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» Structured Parallel Simulation Modeling and Programming
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BMCBI
2008
130views more  BMCBI 2008»
13 years 8 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
ICCS
2009
Springer
14 years 3 months ago
A Scalable and Adaptable Solution Framework within Components of the Community Climate System Model
Abstract. A framework for a fully implicit solution method is implemented into (1) the High Order Methods Modeling Environment (HOMME), which is a spectral element dynamical core o...
Katherine J. Evans, Damian W. I. Rouson, Andrew G....
TSP
2008
179views more  TSP 2008»
13 years 8 months ago
Estimation in Gaussian Graphical Models Using Tractable Subgraphs: A Walk-Sum Analysis
Graphical models provide a powerful formalism for statistical signal processing. Due to their sophisticated modeling capabilities, they have found applications in a variety of fie...
V. Chandrasekaran, Jason K. Johnson, Alan S. Wills...
BMCBI
2010
141views more  BMCBI 2010»
13 years 8 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
CODES
2008
IEEE
14 years 2 months ago
Static analysis for fast and accurate design space exploration of caches
Application-specific system-on-chip platforms create the opportunity to customize the cache configuration for optimal performance with minimal chip estate. Simulation, in partic...
Yun Liang, Tulika Mitra