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BMCBI
2011
13 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
CVPR
2011
IEEE
13 years 1 months ago
Learning structured prediction models for interactive image labeling
We propose structured models for image labeling that take into account the dependencies among the image labels explicitly. These models are more expressive than independent label ...
Thomas Mensink, Jakob Verbeek, Gabriela Csurka
EMNLP
2011
12 years 6 months ago
Heuristic Search for Non-Bottom-Up Tree Structure Prediction
State of the art Tree Structures Prediction techniques rely on bottom-up decoding. These approaches allow the use of context-free features and bottom-up features. We discuss the l...
Andrea Gesmundo, James Henderson
BMCBI
2006
112views more  BMCBI 2006»
13 years 6 months ago
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins
Background: We describe Distill, a suite of servers for the prediction of protein structural features: secondary structure; relative solvent accessibility; contact density; backbo...
Davide Baù, Alberto J. M. Martin, Catherine...
BMCBI
2008
102views more  BMCBI 2008»
13 years 6 months ago
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary
Background: A number of sequence-based methods exist for protein secondary structure prediction. Protein secondary structures can also be determined experimentally from circular d...
Jonathan G. Lees, Robert W. Janes