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» Structured Prediction Models via the Matrix-Tree Theorem
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RECOMB
2003
Springer
14 years 8 months ago
Large scale reconstruction of haplotypes from genotype data
Critical to the understanding of the genetic basis for complex diseases is the modeling of human variation. Most of this variation can be characterized by single nucleotide polymo...
Eleazar Eskin, Eran Halperin, Richard M. Karp
KDD
2009
ACM
191views Data Mining» more  KDD 2009»
14 years 8 months ago
Scalable pseudo-likelihood estimation in hybrid random fields
Learning probabilistic graphical models from high-dimensional datasets is a computationally challenging task. In many interesting applications, the domain dimensionality is such a...
Antonino Freno, Edmondo Trentin, Marco Gori
CORR
2010
Springer
144views Education» more  CORR 2010»
13 years 7 months ago
CLP-based protein fragment assembly
Abstract. The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments ar...
Alessandro Dal Palù, Agostino Dovier, Feder...
BMCBI
2010
167views more  BMCBI 2010»
13 years 7 months ago
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach
Background: Transcriptional gene regulation is one of the most important mechanisms in controlling many essential cellular processes, including cell development, cell-cycle contro...
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pag...
PKDD
2010
Springer
178views Data Mining» more  PKDD 2010»
13 years 5 months ago
Graph Regularized Transductive Classification on Heterogeneous Information Networks
A heterogeneous information network is a network composed of multiple types of objects and links. Recently, it has been recognized that strongly-typed heterogeneous information net...
Ming Ji, Yizhou Sun, Marina Danilevsky, Jiawei Han...