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ICASSP
2008
IEEE
14 years 3 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
ICML
2009
IEEE
14 years 9 months ago
Learning structural SVMs with latent variables
We present a large-margin formulation and algorithm for structured output prediction that allows the use of latent variables. Our proposal covers a large range of application prob...
Chun-Nam John Yu, Thorsten Joachims
BIBE
2003
IEEE
124views Bioinformatics» more  BIBE 2003»
14 years 2 months ago
Prediction of Contact Maps Using Support Vector Machines
Contact map prediction is of great interest for its application in fold recognition and protein 3D structure determination. In this paper we present a contact-map prediction algor...
Ying Zhao, George Karypis
CVPR
2012
IEEE
11 years 11 months ago
Weakly supervised structured output learning for semantic segmentation
We address the problem of weakly supervised semantic segmentation. The training images are labeled only by the classes they contain, not by their location in the image. On test im...
Alexander Vezhnevets, Vittorio Ferrari, Joachim M....
BMCBI
2008
131views more  BMCBI 2008»
13 years 9 months ago
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Background: Identification of protein complexes is crucial for understanding principles of cellular organization and functions. As the size of protein-protein interaction set incr...
Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Ch...