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» Structured Weight-Based Prediction Algorithms
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BMCBI
2006
101views more  BMCBI 2006»
13 years 9 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
RECOMB
2005
Springer
14 years 9 months ago
Consensus Folding of Unaligned RNA Sequences Revisited
As one of the earliest problems in computational biology, RNA secondary structure prediction (sometimes referred to as "RNA folding") problem has attracted attention agai...
Vineet Bafna, Haixu Tang, Shaojie Zhang
COLING
1996
13 years 10 months ago
Top-Down Predictive Linking and Complex-Feature-Based Formalisms
Automatic compilation of the linking relation employed in certain parsing algorithms for context-free languages is examined. Special problems arise in the extension of these algor...
James Kilbury
BMCBI
2005
162views more  BMCBI 2005»
13 years 8 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
WABI
2009
Springer
109views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Fast Prediction of RNA-RNA Interaction
Regulatory antisense RNAs are a class of ncRNAs that regulate gene expression by prohibiting the translation of an mRNA by establishing stable interactions with a target sequence. ...
Raheleh Salari, Rolf Backofen, Süleyman Cenk ...