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» Structured Weight-Based Prediction Algorithms

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AAIM
2007
Springer

145views Algorithms» more AAIM 2007»

Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots

14 years 1 months ago

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We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...

Minghui Jiang

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GECCO
2008
Springer

164views Optimization» more GECCO 2008»

Genetic algorithms with local search optimization for protein structure prediction problem

13 years 8 months ago

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This paper presents a new Genetic Algorithm for Protein Structure Prediction problem in both 2D and 3D hydrophobichydrophilic lattice models, introduced in [1]. Our algorithm evol...

Igor Berenboym, Mireille Avigal

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GECCO
2006
Springer

176views Optimization» more GECCO 2006»

A genetic algorithm with backtracking for protein structure prediction

13 years 11 months ago

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In this paper, we propose a simple genetic algorithm for finding the optimal conformation of a protein using the three-dimensional square HP model. A backtracking procedure is use...

Clayton Matthew Johnson, Anitha Katikireddy

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BIOINFORMATICS
2005

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Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

13 years 7 months ago

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Jens Reeder, Robert Giegerich

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