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» Sublinear Algorithms for Parameterized Matching
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BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
ISAAC
2007
Springer
183views Algorithms» more  ISAAC 2007»
14 years 1 months ago
The Complexity of Finding Subgraphs Whose Matching Number Equals the Vertex Cover Number
The class of graphs where the size of a minimum vertex cover equals that of a maximum matching is known as K¨onig-Egerv´ary graphs. K¨onig-Egerv´ary graphs have been studied ex...
Sounaka Mishra, Venkatesh Raman, Saket Saurabh, So...
LATA
2009
Springer
14 years 2 months ago
Counting Parameterized Border Arrays for a Binary Alphabet
The parameterized pattern matching problem is a kind of pattern matching problem, where a pattern is considered to occur in a text when there exists a renaming bijection on the alp...
Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayu...
CVPR
2004
IEEE
14 years 9 months ago
Fast Contour Matching Using Approximate Earth Mover's Distance
Weighted graph matching is a good way to align a pair of shapes represented by a set of descriptive local features; the set of correspondences produced by the minimum cost matchin...
Kristen Grauman, Trevor Darrell
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 7 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov