223 search results - page 6 / 45 » Suffix Arrays on Words |
BIBM
2009
IEEE
13 years 10 months ago
2009
IEEE
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
ACL
2004
13 years 8 months ago
2004
Parsing systems which rely on hand-coded linguistic descriptions can only perform adequately in as far as these descriptions are correct and complete. The paper describes an error...
GCB
2004
Springer
13 years 10 months ago
2004
Springer
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
ICGI
2010
Springer
13 years 7 months ago
2010
Springer
Abstract. In this article, we propose the use of suffix arrays to efficiently implement n-gram language models with practically unlimited size n. This approach, which is used with ...
DCC
2009
IEEE
14 years 7 months ago
2009
IEEE
We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm. The SA-IS algorithm is novel because of the LMS-substrings used for the pro...