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» Suffix trees for very large genomic sequences
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SAC
2004
ACM
14 years 1 months ago
A parallel algorithm for the extraction of structured motifs
In this work we propose a parallel algorithm for the efficient extraction of binding-site consensus from genomic sequences. This algorithm, based on an existing approach, extracts...
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T....
BMCBI
2010
100views more  BMCBI 2010»
13 years 8 months ago
MapMi: automated mapping of microRNA loci
Background: A large effort to discover microRNAs (miRNAs) has been under way. Currently miRBase is their primary repository, providing annotations of primary sequences, precursors...
José Afonso Guerra-Assunção, ...
RECOMB
2005
Springer
14 years 8 months ago
Likely Scenarios of Intron Evolution
Whether common ancestors of eukaryotes and prokaryotes had introns is one of the oldest unanswered questions in molecular evolution. Recently completed genome sequences have been u...
Miklós Csürös
BMCBI
2004
131views more  BMCBI 2004»
13 years 8 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
UAI
2008
13 years 10 months ago
Feature Selection via Block-Regularized Regression
Identifying co-varying causal elements in very high dimensional feature space with internal structures, e.g., a space with as many as millions of linearly ordered features, as one...
Seyoung Kim, Eric P. Xing