—Interactions between transcription factors (TFs) are necessary for deciphering the complex mechanisms of transcription regulation in eukaryotes. In this paper, we proposed a nov...
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Abstract--Large-margin methods, such as support vector machines (SVMs), have been very successful in classification problems. Recently, maximum margin discriminant analysis (MMDA) ...
Graph kernels methods are based on an implicit embedding of graphs within a vector space of large dimension. This implicit embedding allows to apply to graphs methods which where u...
We present a new method that compresses sentences by removing words. In a first stage, it generates candidate compressions by removing branches from the source sentence's dep...