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» Support Vector Training of Protein Alignment Models
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KDD
2005
ACM
168views Data Mining» more  KDD 2005»
14 years 8 months ago
Nomograms for visualizing support vector machines
We propose a simple yet potentially very effective way of visualizing trained support vector machines. Nomograms are an established model visualization technique that can graphica...
Aleks Jakulin, Martin Mozina, Janez Demsar, Ivan B...
BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
MCS
2005
Springer
14 years 1 months ago
Half-Against-Half Multi-class Support Vector Machines
A Half-Against-Half (HAH) multi-class SVM is proposed in this paper. Unlike the commonly used One-Against-All (OVA) and One-Against-One (OVO) implementation methods, HAH is built ...
Hansheng Lei, Venu Govindaraju
JCP
2008
104views more  JCP 2008»
13 years 7 months ago
Analysis and Improved Recognition of Protein Names Using Transductive SVM
We first analyzed protein names using various dictionaries and databases and found five problems with protein names; i.e., the treatment of special characters, the treatment of hom...
Masaki Murata, Tomohiro Mitsumori, Kouichi Doi
23
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AISS
2010
147views more  AISS 2010»
13 years 5 months ago
Correlating Lattice Constant of Cubic Perovskites to Atomic Parameters Using Support Vector Regression
Recently, due to problems arising from lattice mismatch in thin film growth in semiconductor manufacturing industry, researchers have shown great interest in modeling the physioch...
Abdul Majid, Yeon Soo Lee