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ALMOB
2008
160views more  ALMOB 2008»
13 years 8 months ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich
BMCBI
2008
149views more  BMCBI 2008»
13 years 8 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
CGF
2010
218views more  CGF 2010»
13 years 8 months ago
Mesh Snapping: Robust Interactive Mesh Cutting Using Fast Geodesic Curvature Flow
This paper considers the problem of interactively finding the cutting contour to extract components from a given mesh. Some existing methods support cuts of arbitrary shape but re...
Juyong Zhang, Chunlin Wu, Jianfei Cai, Jianmin Zhe...
CORR
2008
Springer
109views Education» more  CORR 2008»
13 years 8 months ago
Dependence Balance Based Outer Bounds for Gaussian Networks with Cooperation and Feedback
We obtain new outer bounds on the capacity regions of the two-user multiple access channel with generalized feedback (MAC-GF) and the two-user interference channel with generalize...
Ravi Tandon, Sennur Ulukus
BMCBI
2006
205views more  BMCBI 2006»
13 years 8 months ago
Application of Petri net based analysis techniques to signal transduction pathways
Background: Signal transduction pathways are usually modelled using classical quantitative methods, which are based on ordinary differential equations (ODEs). However, some diffic...
Andrea Sackmann, Monika Heiner, Ina Koch