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PODC
2010
ACM
13 years 11 months ago
Transactional predication: high-performance concurrent sets and maps for STM
Concurrent collection classes are widely used in multi-threaded programming, but they provide atomicity only for a fixed set of operations. Software transactional memory (STM) pr...
Nathan Grasso Bronson, Jared Casper, Hassan Chafi,...
WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
14 years 2 months ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
IJHPCA
2008
131views more  IJHPCA 2008»
13 years 7 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
IPPS
2006
IEEE
14 years 1 months ago
Composite Abortable Locks
The need to allow threads to abort an attempt to acquire a lock (sometimes called a timeout) is an interesting new requirement driven by state-of-the-art database applications wit...
Virendra J. Marathe, Mark Moir, Nir Shavit