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» Synthesizing Stochasticity in Biochemical Systems
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DAC
2007
ACM
14 years 8 months ago
Synthesizing Stochasticity in Biochemical Systems
Randomness is inherent to biochemistry: at each instant, the sequence of reactions that fires is a matter of chance. Some biological systems exploit such randomness, choosing betw...
Brian Fett, Jehoshua Bruck, Marc D. Riedel
BMCBI
2004
323views more  BMCBI 2004»
13 years 7 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
CORR
2010
Springer
135views Education» more  CORR 2010»
13 years 4 months ago
SABRE: A Tool for Stochastic Analysis of Biochemical Reaction Networks
The importance of stochasticity within biological systems has been shown repeatedly during the last years and has raised the need for efficient stochastic tools. We present SABRE, ...
Frédéric Didier, Thomas A. Henzinger...
BIOSYSTEMS
2008
67views more  BIOSYSTEMS 2008»
13 years 7 months ago
Predator-prey dynamics in P systems ruled by metabolic algorithm
P systems are used to compute predator
Federico Fontana, Vincenzo Manca
BIOCOMP
2008
13 years 9 months ago
Stochastic Simulation Algorithms for Chemical Reactions
Tae-Hyuk Ahn, Yang Cao, Layne T. Watson