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» Synthetic biology: from modules to systems
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SAC
2002
ACM
13 years 7 months ago
A mobility and traffic generation framework for modeling and simulating ad hoc communication networks
We present a generic mobility and traffic generation framework that can be incorporated into a tool for modeling and simulating large scale ad hoc networks. Three components of thi...
Christopher L. Barrett, Madhav V. Marathe, James P...
BMCBI
2010
150views more  BMCBI 2010»
13 years 7 months ago
Systematic calibration of a cell signaling network model
Background: Mathematical modeling is being applied to increasingly complex biological systems and datasets; however, the process of analyzing and calibrating against experimental ...
Kyoung Ae Kim, Sabrina L. Spencer, John G. Albeck,...
BMCBI
2010
164views more  BMCBI 2010»
13 years 7 months ago
Investigating the validity of current network analysis on static conglomerate networks by protein network stratification
Background: A molecular network perspective forms the foundation of systems biology. A common practice in analyzing protein-protein interaction (PPI) networks is to perform networ...
Minlu Zhang, Long J. Lu
ICDM
2009
IEEE
125views Data Mining» more  ICDM 2009»
14 years 2 months ago
A Fully Automated Method for Discovering Community Structures in High Dimensional Data
—Identifying modules, or natural communities, in large complex networks is fundamental in many fields, including social sciences, biological sciences and engineering. Recently s...
Jianhua Ruan
BMCBI
2010
172views more  BMCBI 2010»
13 years 7 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane