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» Systematic Evaluation of Scaling Methods for Gene Expression...
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JMLR
2010
125views more  JMLR 2010»
13 years 2 months ago
On utility of gene set signatures in gene expression-based cancer class prediction
Machine learning methods that can use additional knowledge in their inference process are central to the development of integrative bioinformatics. Inclusion of background knowled...
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Cu...
CVPR
2008
IEEE
14 years 9 months ago
A unified framework for generalized Linear Discriminant Analysis
Linear Discriminant Analysis (LDA) is one of the wellknown methods for supervised dimensionality reduction. Over the years, many LDA-based algorithms have been developed to cope w...
Shuiwang Ji, Jieping Ye
TNN
2008
105views more  TNN 2008»
13 years 7 months ago
Generalized Linear Discriminant Analysis: A Unified Framework and Efficient Model Selection
Abstract--High-dimensional data are common in many domains, and dimensionality reduction is the key to cope with the curse-of-dimensionality. Linear discriminant analysis (LDA) is ...
Shuiwang Ji, Jieping Ye
BMCBI
2010
111views more  BMCBI 2010»
13 years 7 months ago
Functional Analysis: Evaluation of Response Intensities - Tailoring ANOVA for Lists of Expression Subsets
Background: Microarray data is frequently used to characterize the expression profile of a whole genome and to compare the characteristics of that genome under several conditions....
Fabrice Berger, Bertrand De Meulder, Anthoula Gaig...
BMCBI
2011
12 years 11 months ago
Clustering gene expression data with a penalized graph-based metric
Background: The search for cluster structure in microarray datasets is a base problem for the so-called “-omic sciences”. A difficult problem in clustering is how to handle da...
Ariel E. Bayá, Pablo M. Granitto