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» Systematic Evaluation of Scaling Methods for Gene Expression...
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BMCBI
2005
102views more  BMCBI 2005»
13 years 7 months ago
Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computatio
Background: A major challenge in computational genomics is the development of methodologies that allow accurate genome-wide prediction of the regulatory targets of a transcription...
Emmitt R. Jolly, Chen-Shan Chin, Ira Herskowitz, H...
BMCBI
2006
115views more  BMCBI 2006»
13 years 7 months ago
SimArray: a user-friendly and user-configurable microarray design tool
Background: Microarrays were first developed to assess gene expression but are now also used to map protein-binding sites and to assess allelic variation between individuals. Rega...
Richard P. Auburn, Roslin R. Russell, Bettina Fisc...
KDD
2004
ACM
118views Data Mining» more  KDD 2004»
14 years 7 months ago
Parallel computation of high dimensional robust correlation and covariance matrices
The computation of covariance and correlation matrices are critical to many data mining applications and processes. Unfortunately the classical covariance and correlation matrices...
James Chilson, Raymond T. Ng, Alan Wagner, Ruben H...
EDBT
2010
ACM
177views Database» more  EDBT 2010»
14 years 2 months ago
Bridging the gap between intensional and extensional query evaluation in probabilistic databases
There are two broad approaches to query evaluation over probabilistic databases: (1) Intensional Methods proceed by manipulating expressions over symbolic events associated with u...
Abhay Jha, Dan Olteanu, Dan Suciu
BMCBI
2006
374views more  BMCBI 2006»
13 years 7 months ago
AMDA: an R package for the automated microarray data analysis
Background: Microarrays are routinely used to assess mRNA transcript levels on a genome-wide scale. Large amount of microarray datasets are now available in several databases, and...
Mattia Pelizzola, Norman Pavelka, Maria Foti, Paol...