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» Systems biology, models, and concurrency
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BMCBI
2005
189views more  BMCBI 2005»
13 years 9 months ago
Quantitative inference of dynamic regulatory pathways via microarray data
Background: The cellular signaling pathway (network) is one of the main topics of organismic investigations. The intracellular interactions between genes in a signaling pathway ar...
Wen-Chieh Chang, Chang-Wei Li, Bor-Sen Chen
BMCBI
2010
123views more  BMCBI 2010»
13 years 4 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
STOC
2002
ACM
112views Algorithms» more  STOC 2002»
14 years 10 months ago
Wait-free consensus with infinite arrivals
A randomized algorithm is given that solves the wait-free consensus problem for a shared-memory model with infinitely many processes. The algorithm is based on a weak shared coin ...
James Aspnes, Gauri Shah, Jatin Shah
SIGMOD
2006
ACM
145views Database» more  SIGMOD 2006»
14 years 10 months ago
Automatic client-server partitioning of data-driven web applications
Current application development tools provide completely different programming models for the application server (e.g., Java and J2EE) and the client web browser (e.g., JavaScript...
Nicholas Gerner, Fan Yang 0002, Alan J. Demers, Jo...
ISPASS
2009
IEEE
14 years 4 months ago
Analyzing CUDA workloads using a detailed GPU simulator
Modern Graphic Processing Units (GPUs) provide sufficiently flexible programming models that understanding their performance can provide insight in designing tomorrow’s manyco...
Ali Bakhoda, George L. Yuan, Wilson W. L. Fung, He...