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» Take Advantage of the Computing Power of DNA Computers
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ICCS
2009
Springer
14 years 1 months ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...
RECOMB
2008
Springer
14 years 7 months ago
Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads
Next Generation Sequencing (NGS) technologies are capable of reading millions of short DNA sequences both quickly and cheaply. While these technologies are already being used for r...
Paul Medvedev, Michael Brudno
WSC
2007
13 years 9 months ago
A hybrid epidemic model: combining the advantages of agent-based and equation-based approaches
Agent-based models (ABMs) are powerful in describing structured epidemiological processes involving human behavior and local interaction. The joint behavior of the agents can be v...
Georgiy V. Bobashev, D. Michael Goedecke, Feng Yu,...
DAC
2009
ACM
14 years 1 days ago
Xquasher: a tool for efficient computation of multiple linear expressions
— Digital signal processing applications often require the computation of linear systems. These computations can be considerably expensive and require optimizations for lower pow...
Arash Arfaee, Ali Irturk, Nikolay Laptev, Farzan F...
RECOMB
2005
Springer
14 years 7 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao