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CPM
2001
Springer
72views Combinatorics» more  CPM 2001»
13 years 11 months ago
Tandem Cyclic Alignment
We present a solution for the following problem. Given two sequences X = x1x2 · · · xn and Y = y1y2 · · · ym, n ≤ m, find the best scoring alignment of X = Xk [i] vs Y ove...
Gary Benson
RECOMB
1997
Springer
13 years 11 months ago
Sequence alignment with tandem duplication
Algorithm development for comparing and aligning biological sequences has, until recently, been based on the SI model of mutational events which assumes that modi cation of sequen...
Gary Benson
WABI
2005
Springer
110views Bioinformatics» more  WABI 2005»
14 years 14 days ago
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens...
CPM
2001
Springer
211views Combinatorics» more  CPM 2001»
13 years 11 months ago
Fuzzy Hamming Distance: A New Dissimilarity Measure
Lempel Ziv Coding (Extended Abstract). . . . . . . . . . . . . . . . . . . . . . . 18 Shmuel Tomi Klein, Yair Wiseman Approximate Matching of Run-Length Compressed Strings . . . . ...
Abraham Bookstein, Shmuel T. Klein, Timo Raita
RECOMB
2002
Springer
14 years 7 months ago
Comparison of minisatellites
In the class of repeated sequences that occur in DNA, minisatellites have been found polymorphic and became useful tools in genetic mapping and forensic studies. They consist of a...
Eric Rivals, Sèverine Bérard