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NAR
1998
122views more  NAR 1998»
13 years 7 months ago
The PIR-International Protein Sequence Database
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining...
Winona C. Barker, John S. Garavelli, Daniel H. Haf...
ORL
1998
68views more  ORL 1998»
13 years 7 months ago
A fast bipartite network flow algorithm for selective assembly
Bipartite network flow problems naturally arise in applications such as selective assembly and preemptive scheduling. This paper presents fast algorithms for these problems that ...
Satoru Iwata, Tomomi Matsui, S. Thomas McCormick
SQJ
2002
110views more  SQJ 2002»
13 years 7 months ago
A General Model of Unit Testing Efficacy
Much of software engineering is targeted towards identifying and removing existing defects while preventing the injection of new ones. Defect management is therefore one important ...
Houman Younessi, Panlop Zeephongsekul, Winai Bodhi...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
BMCBI
2010
108views more  BMCBI 2010»
13 years 7 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...