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» Techniques for Reactive System Design: The Tools in TRADE
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BMCBI
2006
131views more  BMCBI 2006»
13 years 7 months ago
The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
Background: Analysis of DNA microarray data takes as input spot intensity measurements from scanner software and returns differential expression of genes between two conditions, t...
Allan A. Sioson, Shrinivasrao P. Mane, Pinghua Li,...
ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
PLPV
2009
ACM
14 years 4 months ago
Positively dependent types
This paper is part of a line of work on using the logical techniques of polarity and focusing to design a dependent programming language, with particular emphasis on programming w...
Daniel R. Licata, Robert Harper
SC
2009
ACM
14 years 2 months ago
Robust workflows for science and engineering
Scientific workflow tools allow users to specify complex computational experiments and provide a good framework for robust science and engineering. Workflows consist of pipelines ...
David Abramson, Blair Bethwaite, Colin Enticott, S...
IISWC
2008
IEEE
14 years 2 months ago
On the representativeness of embedded Java benchmarks
— Java has become one of the predominant languages for embedded and mobile platforms due to its architecturally neutral design, portability, and security. But Java execution in t...
Ciji Isen, Lizy Kurian John, Jung Pil Choi, Hyo Ju...