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    BMCBI
    2008
    114views more  BMCBI 2008»
    Dinucleotide controlled null models for comparative RNA gene prediction
    13 years 8 months ago
    Dinucleotide controlled null models for comparative RNA gene prediction
    Download  www.tbi.univie.ac.at
    Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
    Tanja Gesell, Stefan Washietl
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    BMCBI
    2008
    143views more  BMCBI 2008»
    Automatic detection of exonic splicing enhancers (ESEs) using SVMs
    13 years 8 months ago
    Automatic detection of exonic splicing enhancers (ESEs) using SVMs
    Download  www.biomedcentral.com
    Background: Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for S...
    Britta Mersch, Alexander Gepperth, Sándor S...
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    BMCBI
    2008
    135views more  BMCBI 2008»
    Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
    13 years 7 months ago
    Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
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    Background: FREGENE simulates sequence-level data over large genomic regions in large populations. Because, unlike coalescent simulators, it works forwards through time, it allows...
    Marc Chadeau-Hyam, Clive J. Hoggart, Paul F. O'Rei...
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    BMCBI
    2008
    166views more  BMCBI 2008»
    Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
    13 years 7 months ago
    Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
    Download  www.biomedcentral.com
    Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
    Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 7 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    Download  www.biomedcentral.com
    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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