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WABI
2001
Springer
138views Bioinformatics» more  WABI 2001»
14 years 3 months ago
Algorithms for Finding Gene Clusters
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
Steffen Heber, Jens Stoye
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
14 years 2 months ago
Minimum Entropy Clustering and Applications to Gene Expression Analysis
Clustering is a common methodology for analyzing the gene expression data. In this paper, we present a new clustering algorithm from an information-theoretic point of view. First,...
Haifeng Li, Keshu Zhang, Tao Jiang
BIBE
2010
IEEE
181views Bioinformatics» more  BIBE 2010»
14 years 2 days ago
Multi Level Clustering of Phylogenetic Profiles
The prediction of gene function from genome sequences is one of the main issues in Bioinformatics. Most computational approaches are based on the similarity between sequences to in...
Fotis E. Psomopoulos, Pericles A. Mitkas
BMCBI
2004
146views more  BMCBI 2004»
13 years 10 months ago
Multivariate search for differentially expressed gene combinations
Background: To identify differentially expressed genes, it is standard practice to test a twosample hypothesis for each gene with a proper adjustment for multiple testing. Such te...
Yuanhui Xiao, Robert D. Frisina, Alexander Gordon,...
RECOMB
2005
Springer
14 years 11 months ago
The Incompatible Desiderata of Gene Cluster Properties
Abstract. There is widespread interest in comparative genomics in determining if historically and/or functionally related genes are spatially clustered in the genome, and whether t...
Rose Hoberman, Dannie Durand