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SIBGRAPI
2008
IEEE
14 years 2 months ago
Structural Matching of 2D Electrophoresis Gels using Graph Models
2D electrophoresis is a well known method for protein separation which is extremely useful in the field of proteomics. Each spot in the image represents a protein accumulation an...
Alexandre Noma, Alvaro Pardo, Roberto Marcondes Ce...
CEC
2007
IEEE
14 years 2 months ago
Graph design by graph grammar evolution
— Determining the optimal topology of a graph is pertinent to many domains, as graphs can be used to model a variety of systems. Evolutionary algorithms constitute a popular opti...
Martin H. Luerssen, David M. W. Powers
IPPS
2007
IEEE
14 years 2 months ago
Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture
We present a study of multithreaded implementations of Thorup’s algorithm for solving the Single Source Shortest Path (SSSP) problem for undirected graphs. Our implementations l...
Joseph R. Crobak, Jonathan W. Berry, Kamesh Maddur...
AGTIVE
2007
Springer
14 years 2 months ago
A First Experimental Evaluation of Search Plan Driven Graph Pattern Matching
Abstract. With graph pattern matching the field of graph transformation (GT) includes an NP-complete subtask. But for real-life applications it is essential that graph pattern mat...
Gernot Veit Batz, Moritz Kroll, Rubino Geiß
FOCS
2006
IEEE
14 years 2 months ago
Inclusion--Exclusion Algorithms for Counting Set Partitions
Given an n-element set U and a family of subsets S ⊆ 2U we show how to count the number of k-partitions S1 ∪ · · · ∪ Sk = U into subsets Si ∈ S in time 2nnO(1). The only...
Andreas Björklund, Thore Husfeldt