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BMCBI
2006
101views more  BMCBI 2006»
13 years 8 months ago
Hierarchical modularity of nested bow-ties in metabolic networks
Background: The exploration of the structural topology and the organizing principles of genomebased large-scale metabolic networks is essential for studying possible relations bet...
Jing Zhao, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-X...
WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
14 years 3 months ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
NHM
2010
131views more  NHM 2010»
13 years 3 months ago
A mathematical model for dynamic wettability alteration controlled by water-rock chemistry
Previous experimental studies of spontaneous imbibition on chalk core plugs have shown that seawater may change the wettability in the direction of more water-wet conditions in cha...
Steinar Evje, Aksel Hiorth
BMCBI
2010
113views more  BMCBI 2010»
13 years 8 months ago
Use of historic metabolic biotransformation data as a means of anticipating metabolic sites using MetaPrint2D and Bioclipse
Background: Predicting metabolic sites is important in the drug discovery process to aid in rapid compound optimisation. No interactive tool exists and most of the useful tools ar...
Lars Carlsson, Ola Spjuth, Samuel Adams, Robert C....
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
14 years 3 months ago
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
Background: Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screeni...
Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald ...