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BMCBI
2004
120views more  BMCBI 2004»
13 years 7 months ago
Clustering under the line graph transformation: application to reaction network
Background: Many real networks can be understood as two complementary networks with two kind of nodes. This is the case of metabolic networks where the first network has chemical ...
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Mino...
ICCMS
2009
118views more  ICCMS 2009»
13 years 5 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
ICCS
2005
Springer
14 years 29 days ago
Total Energy Singular Vectors for Atmospheric Chemical Transport Models
The aim of this paper is to address computational aspects of the total energy singular vector analysis of atmospheric chemical transport models. We discuss the symmetry of the tang...
Wenyuan Liao, Adrian Sandu
ISCI
2008
137views more  ISCI 2008»
13 years 7 months ago
Inference of differential equation models by genetic programming
This paper describes an evolutionary method for identifying a causal model from the observed time series data. We use a system of ordinary differential equations (ODEs) as the cau...
Hitoshi Iba
GG
2004
Springer
14 years 25 days ago
Analysis of Metabolic Pathways by Graph Transformation
Biochemical pathways, such as metabolic, regulatory, and signal transduction pathways, constitute complex networks of functional and physical interactions between molecular species...
Francesc Rosselló, Gabriel Valiente