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    BMCBI
    2005
    147views more  BMCBI 2005»
    GATA: a graphic alignment tool for comparative sequence analysis
    13 years 7 months ago
    GATA: a graphic alignment tool for comparative sequence analysis
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    Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
    David A. Nix, Michael B. Eisen
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    BMCBI
    2005
    251views more  BMCBI 2005»
    Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
    13 years 7 months ago
    Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
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    Background: The ability to distinguish between genes and proteins is essential for understanding biological text. Support Vector Machines (SVMs) have been proven to be very effici...
    Tapio Pahikkala, Filip Ginter, Jorma Boberg, Jouni...
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    BMCBI
    2005
    100views more  BMCBI 2005»
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
    13 years 7 months ago
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
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    Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
    Elena Rivas
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    BMCBI
    2005
    151views more  BMCBI 2005»
    ProMiner: rule-based protein and gene entity recognition
    13 years 7 months ago
    ProMiner: rule-based protein and gene entity recognition
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    Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
    Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
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    JCB
    2007
    144views more  JCB 2007»
    Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
    13 years 7 months ago
    Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
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    Analysis of biopolymer sequences and structures generally adopts one of two approaches: use of detailed biophysical theoretical models of the system with experimentally-determined...
    Scott C. Schmidler, Joseph E. Lucas, Terrence G. O...
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