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BIBE
2008
IEEE
101views Bioinformatics» more  BIBE 2008»
15 years 4 months ago
Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference v
We propose the use of formal ontological inferencing, rather than cladistics, to reconstruct phylogeny trees and to analyze the evolutionary relationships between species. For this...
Arash Shaban-Nejad, Volker Haarslev
GECCO
2009
Springer
121views Optimization» more  GECCO 2009»
15 years 9 months ago
Evolutionary algorithms and dynamic programming
Recently, it has been proven that evolutionary algorithms produce good results for a wide range of combinatorial optimization problems. Some of the considered problems are tackled...
Benjamin Doerr, Anton Eremeev, Christian Horoba, F...
131
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BMCBI
2006
150views more  BMCBI 2006»
15 years 2 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
16 years 2 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
150
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NETWORKING
2007
15 years 4 months ago
Construction of a Proxy-Based Overlay Skeleton Tree for Large-Scale Real-Time Group Communications
Abstract. We consider the problem of constructing a proxy-based overlay skeleton tree (POST) in the backbone service domain of a two-tier overlay multicast infrastructure. Spanning...
Jun Guo, Sanjay Jha