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» The Complexity of Phrase Alignment Problems
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CPM
2003
Springer
68views Combinatorics» more  CPM 2003»
14 years 4 months ago
Multiple Genome Alignment: Chaining Algorithms Revisited
Given n fragments from k > 2 genomes, we will show how to find an optimal chain of colinear non-overlapping fragments in time O(n logk−2 n log log n) and space O(n logk−2 n...
Mohamed Ibrahim Abouelhoda, Enno Ohlebusch
IJCNN
2006
IEEE
14 years 5 months ago
Spatiotemporal Pattern Recognition via Liquid State Machines
— The applicability of complex networks of spiking neurons as a general purpose machine learning technique remains open. Building on previous work using macroscopic exploration o...
Eric Goodman, Dan Ventura
AAAI
2000
14 years 9 days ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang
JAT
2010
171views more  JAT 2010»
13 years 5 months ago
Chebyshev approximation of the null function by an affine combination of complex exponential functions
We describe the theoretical solution of an approximation problem that uses a finite weighted sum of complex exponential functions. The problem arises in an optimization model for t...
Paul Armand, Joël Benoist, Elsa Bousquet
TCBB
2010
114views more  TCBB 2010»
13 years 9 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...