Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
A relational probability tree (RPT) is a type of decision tree that can be used for probabilistic classification of instances with a relational structure. Each leaf of an RPT cont...
Biomolecular networks dynamically respond to stimuli and implement cellular function. Understanding these dynamic changes is the key challenge for cell biologists. As biomolecular...
Xiaohua Hu, Fang-Xiang Wu, Michael K. Ng, Bahrad A...
Formal languages for probabilistic modeling enable re-use, modularity, and descriptive clarity, and can foster generic inference techniques. We introduce Church, a universal langu...
Noah Goodman, Vikash K. Mansinghka, Daniel M. Roy,...