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» The Compositional Structure of Gene Ontology Terms
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JBCB
2010
138views more  JBCB 2010»
13 years 2 months ago
Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method
Protein function prediction is an active area of research in bioinformatics. And yet, transfer of annotation on the basis of sequence or structural similarity remains widely used ...
Artem Sokolov, Asa Ben-Hur
EVOW
2009
Springer
13 years 11 months ago
A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms
Abstract. This paper proposes a novel Ant Colony Optimisation algorithm for the hierarchical problem of predicting protein functions using the Gene Ontology (GO). The GO structure ...
Fernando E. B. Otero, Alex Alves Freitas, Colin G....
SIGMOD
2004
ACM
88views Database» more  SIGMOD 2004»
14 years 7 months ago
Using Reasoning to Guide Annotation with Gene Ontology Terms in GOAT
High-quality annotation of biological data is central to bioinformatics. Annotation using terms from ontologies provides reliable computational access to data. The Gene Ontology (...
Michael Bada, Daniele Turi, Robin McEntire, Robert...
BIBE
2005
IEEE
115views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
GOMIT: A Generic and Adaptive Annotation Algorithm Based on Gene Ontology Term Distributions
We address the issue of providing highly informative annotations using information revealed by the structured vocabularies of Gene Ontology (GO). For a target, a set of candidate ...
In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen
LREC
2008
124views Education» more  LREC 2008»
13 years 8 months ago
Clustering Related Terms with Definitions
It is a challenging task to match similar or related terms/expressions in NLP and Text Mining applications. Two typical areas in need for such work are terminology and ontology co...
Scott Songlin Piao, John McNaught, Sophia Ananiado...