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» The Construction of Minimal DNA Expressions
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NC
2006
149views Neural Networks» more  NC 2006»
13 years 10 months ago
The Construction of Minimal DNA Expressions
Abstract. We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Diff...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
DNA
2004
Springer
111views Bioinformatics» more  DNA 2004»
14 years 4 months ago
Combinatorial Aspects of Minimal DNA Expressions
We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Different DNA...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
BMCBI
2006
117views more  BMCBI 2006»
13 years 11 months ago
Gene Designer: a synthetic biology tool for constructing artificial DNA segments
Background: Direct synthesis of genes is rapidly becoming the most efficient way to make functional genetic constructs and enables applications such as codon optimization, RNAi re...
Alan Villalobos, Jon E. Ness, Claes Gustafsson, Je...
CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
14 years 4 months ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga
BMCBI
2004
120views more  BMCBI 2004»
13 years 10 months ago
Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information
Background: Expression microarrays are increasingly used to characterize environmental responses and hostparasite interactions for many different organisms. Probe selection for cD...
Yian A. Chen, David J. Mckillen, Shuyuan Wu, Matth...