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» The Distribution of Genomic Distance between Random Genomes
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BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
NAR
2006
68views more  NAR 2006»
13 years 7 months ago
Panzea: a database and resource for molecular and functional diversity in the maize genome
Serving as a community resource, Panzea (http:// www.panzea.org) is the bioinformatics arm of the Molecular and Functional Diversity in the Maize Genome project. Maize, a classica...
Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa ...
BIBE
2007
IEEE
148views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
A New Smoothing Model for Analyzing Array CGH Data
—Array based Comparative Genomic Hybridization (CGH) is a molecular cytogenetic method for the detection of chromosomal imbalances and it has been extensively used for studying c...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...
SODA
2001
ACM
87views Algorithms» more  SODA 2001»
13 years 9 months ago
Gossip is synteny: incomplete gossip and an exact algorithm for syntenic distance
The syntenic distance between two genomes is given by the minimum number of fusions, fissions, and translocations required to transform one into the other, ignoring the order of g...
David Liben-Nowell
BMCBI
2008
200views more  BMCBI 2008»
13 years 7 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia