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» The Distribution of Genomic Distance between Random Genomes
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SODA
2003
ACM
142views Algorithms» more  SODA 2003»
13 years 9 months ago
The similarity metric
—A new class of distances appropriate for measuring similarity relations between sequences, say one type of similarity per distance, is studied. We propose a new “normalized in...
Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vit&...
CANDC
2004
ACM
13 years 7 months ago
The difficult interpretation of transcriptome data: the case of the GATC regulatory network
Genomic analyses on part of Escherichia coli's chromosome had suggested the existence of a GATC regulated network. This has recently been confirmed through a transcriptome an...
Alessandra Riva, Marie-Odile Delorme, Tony Chevali...
UAI
2003
13 years 9 months ago
Markov Random Walk Representations with Continuous Distributions
We propose a framework to extend Markov random walks (Szummer and Jaakkola, 2001) to a continuum of points. In this framework, the transition probability between two points is the...
Chen-Hsiang Yeang, Martin Szummer
ISMB
2003
13 years 9 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh
CORR
2006
Springer
102views Education» more  CORR 2006»
13 years 7 months ago
Similarity of Objects and the Meaning of Words
We survey the emerging area of compression-based, parameter-free, similarity distance measures useful in data-mining, pattern recognition, learning and automatic semantics extracti...
Rudi Cilibrasi, Paul M. B. Vitányi