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» The Equivalence between Biology and Computation
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SP
2008
IEEE
100views Security Privacy» more  SP 2008»
14 years 5 months ago
Towards Practical Privacy for Genomic Computation
Many basic tasks in computational biology involve operations on individual DNA and protein sequences. These sequences, even when anonymized, are vulnerable to re-identification a...
Somesh Jha, Louis Kruger, Vitaly Shmatikov
APAL
2008
102views more  APAL 2008»
13 years 11 months ago
Partial automorphism semigroups
Abstract. We study the relationship between algebraic structures and their inverse semigroups of partial automorphisms. We consider a variety of classes of natural structures inclu...
Jennifer Chubb, Valentina S. Harizanov, Andrei S. ...
BMCBI
2006
145views more  BMCBI 2006»
13 years 11 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
CIBCB
2009
IEEE
14 years 6 hour ago
DDPIn - Distance and density based protein indexing
Protein structure similarity and classification methods have many applications in protein function prediction and associated fields (e.g. drug discovery). In this paper, we propose...
David Hoksza
BMCBI
2011
13 years 6 months ago
Context-dependent transcriptional regulations between signal transduction pathways
Background: Cells coordinate their metabolism, proliferation, and cellular communication according to environmental cues through signal transduction. Because signal transduction h...
Sohyun Hwang, Sangwoo Kim, Heesung Shin, Doheon Le...