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» The Factor Graph Network Model for Biological Systems
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EVOW
2007
Springer
14 years 2 months ago
Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks
The effective reverse engineering of biochemical networks is one of the great challenges of systems biology. The contribution of this paper is two-fold: 1) We introduce a new meth...
Daniel Marbach, Claudio Mattiussi, Dario Floreano
SBRN
2000
IEEE
14 years 1 months ago
Non-Linear Modelling and Chaotic Neural Networks
This paper proposes a simple methodology to construct an iterative neural network which mimics a given chaotic time series. The methodology uses the Gamma test to identify a suita...
Antonia J. Jones, Steve Margetts, Peter Durrant, A...
COMPSAC
2008
IEEE
14 years 3 months ago
Measuring Network Security Using Bayesian Network-Based Attack Graphs
Given the increasing dependence of our societies on information systems, the overall security of these systems should be measured and improved. Existing work generally focuses on ...
Marcel Frigault, Lingyu Wang
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
14 years 1 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
BMCBI
2006
101views more  BMCBI 2006»
13 years 8 months ago
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
Background: The development of algorithms to infer the structure of gene regulatory networks based on expression data is an important subject in bioinformatics research. Validatio...
Tim Van den Bulcke, Koen Van Leemput, Bart Naudts,...