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» The Factor Graph Network Model for Biological Systems
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GECCO
2005
Springer
149views Optimization» more  GECCO 2005»
14 years 2 months ago
There's more to a model than code: understanding and formalizing in silico modeling experience
Mapping biology into computation has both a domain specific aspect – biological theory – and a methodological aspect – model development. Computational modelers have implici...
Janet Wiles, Nicholas Geard, James Watson, Kai Wil...
ICML
2009
IEEE
14 years 9 months ago
Learning structurally consistent undirected probabilistic graphical models
In many real-world domains, undirected graphical models such as Markov random fields provide a more natural representation of the dependency structure than directed graphical mode...
Sushmita Roy, Terran Lane, Margaret Werner-Washbur...
KDD
2009
ACM
132views Data Mining» more  KDD 2009»
14 years 9 months ago
Learning patterns in the dynamics of biological networks
Our dynamic graph-based relational mining approach has been developed to learn structural patterns in biological networks as they change over time. The analysis of dynamic network...
Chang Hun You, Lawrence B. Holder, Diane J. Cook
WWW
2008
ACM
14 years 9 months ago
Social and semantics analysis via non-negative matrix factorization
Social media such as Web forum often have dense interactions between user and content where network models are often appropriate for analysis. Joint non-negative matrix factorizat...
Zhi-Li Wu, Chi-Wa Cheng, Chun-hung Li
JCB
2002
131views more  JCB 2002»
13 years 8 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong