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» The Factor Graph Network Model for Biological Systems
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JMLR
2006
118views more  JMLR 2006»
13 years 8 months ago
Learning Factor Graphs in Polynomial Time and Sample Complexity
We study the computational and sample complexity of parameter and structure learning in graphical models. Our main result shows that the class of factor graphs with bounded degree...
Pieter Abbeel, Daphne Koller, Andrew Y. Ng
NC
2010
150views Neural Networks» more  NC 2010»
13 years 7 months ago
Deterministic and stochastic P systems for modelling cellular processes
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological systems and illustrates th...
Marian Gheorghe, Vincenzo Manca, Francisco Jos&eac...
ICASSP
2008
IEEE
14 years 3 months ago
Joint base-calling of two DNA sequences with factor graphs
—Automated estimation of DNA base-sequences is an important step in genomics and in many other emerging fields in biological and medical sciences. Current automated sequencers p...
Xiaomeng Shi, Desmond S. Lun, Jim Meldrim, Ralf K&...
KDD
2010
ACM
263views Data Mining» more  KDD 2010»
14 years 15 days ago
Social action tracking via noise tolerant time-varying factor graphs
Users’ behaviors (actions) in a social network are influenced by various factors such as personal interests, social influence, and global trends. However, few publications sys...
Chenhao Tan, Jie Tang, Jimeng Sun, Quan Lin, Fengj...
CORR
2012
Springer
209views Education» more  CORR 2012»
12 years 4 months ago
Densest Subgraph in Streaming and MapReduce
The problem of finding locally dense components of a graph is an important primitive in data analysis, with wide-ranging applications from community mining to spam detection and ...
Bahman Bahmani, Ravi Kumar, Sergei Vassilvitskii