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SEMWEB
2009
Springer
14 years 3 months ago
Developing an Ontology from the Application Up
 The  biomedical  ontology  community  is  producing  ontologies  which   represent   biological   knowledge   and   with   a   bias   towards   a   realist   pe...
James Malone, Tomasz Adamusiak, Ele Holloway, Mish...
OTM
2009
Springer
14 years 1 months ago
Detecting Inconsistencies in the Gene Ontology Using Ontology Databases with Not-gadgets
We present ontology databases with not-gadgets, a method for detecting inconsistencies in an ontology with large numbers of annotated instances by using triggers and exclusion depe...
Paea LePendu, Dejing Dou, Doug Howe
BMCBI
2006
155views more  BMCBI 2006»
13 years 8 months ago
AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
Background: DNA microarrays are a powerful tool for monitoring the expression of tens of thousands of genes simultaneously. With the advance of microarray technology, the challeng...
Guoqing Lu, The V. Nguyen, Yuannan Xia, Michael Fr...
BMCBI
2006
249views more  BMCBI 2006»
13 years 8 months ago
Gene functional similarity search tool (GFSST)
Background: With the completion of the genome sequences of human, mouse, and other species and the advent of high throughput functional genomic research technologies such as biomi...
Peisen Zhang, Jinghui Zhang, Huitao Sheng, James J...
GEOS
2007
Springer
14 years 2 months ago
The Gravity Data Ontology: Laying the Foundation for Workflow-Driven Ontologies
Abstract. A workflow-driven ontology is an ontology that encodes disciplinespecific knowledge in the form of concepts and relationships and that facilitates the composition of serv...
Ann Q. Gates, G. Randy Keller, Leonardo Salayandia...