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FOIS
2006
13 years 10 months ago
Formalizing Ontology Alignment and its Operations with Category Theory
An ontology alignment is the expression of relations between different ontologies. In order to view alignments independently from the language expressing ontologies and from the te...
Antoine Zimmermann, Markus Krötzsch, Jé...
BMCBI
2010
117views more  BMCBI 2010»
13 years 8 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
BMCBI
2006
106views more  BMCBI 2006»
13 years 8 months ago
GONOME: measuring correlations between GO terms and genomic positions
Background:Current methods to find significantly under- and over-represented gene ontology (GO) terms in a set of genes consider the genes as equally probable "balls in a bag...
Stefan M. Stanley, Timothy L. Bailey, John S. Matt...
BMCBI
2010
139views more  BMCBI 2010»
13 years 8 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
BMCBI
2006
122views more  BMCBI 2006»
13 years 8 months ago
Genome comparison using Gene Ontology (GO) with statistical testing
Background: Automated comparison of complete sets of genes encoded in two genomes can provide insight on the genetic basis of differences in biological traits between species. Gen...
Zhaotao Cai, Xizeng Mao, Songgang Li, Liping Wei